Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7717

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16084 and 16085 are separated by 47 nucleotides16085 and 16086 are separated by 561 nucleotides mRNA_7716: 16084 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SUPERFAMILY--SSF81383, at 914,377 to 916,926 16084 mRNA_7717: 16085 - K17979 MDM31 mitochondrial distribution and morphology protein 31, at 916,974 to 919,453 16085 mRNA_7718: 16086 - K08516 YKT6 synaptobrevin homolog YKT6, at 920,015 to 921,107 16086

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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916,007 + 16084 mRNA_7716 0.64 +0.9
916,079 + 16084 mRNA_7716 0.67 +2.4
916,107 + 16084 mRNA_7716 0.68 +1.9
916,207 + 16084 mRNA_7716 0.72 +0.3
916,443 - 16084 mRNA_7716 0.81 +1.7
916,741 + +1.1
916,751 + +2.1
916,754 - +0.9
916,763 + +0.8
916,803 + +0.9
916,806 + +0.7
916,949 + -0.1
916,976 - -0.5
919,429 + +0.7
919,575 + +1.6

Or see this region's nucleotide sequence