Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7736

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16104 and 16105 are separated by 583 nucleotides mRNA_7736: 16104 - HMMPfam-Glyoxal oxidase N-terminus-PF07250,HMMPfam-Domain of unknown function (DUF1929)-PF09118,SUPERFAMILY--SSF50965,SUPERFAMILY--SSF81296, at 956,261 to 958,930 16104 mRNA_7737: 16105 - HMMPfam-Antibiotic biosynthesis monooxygenase-PF03992,SUPERFAMILY--SSF54909, at 959,514 to 960,315 16105

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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955,444 + -1.0
955,581 - +0.7
955,607 - +1.4
955,610 + +0.7
955,736 + -0.0
955,741 - -0.0
955,747 - -0.4
955,748 + +0.3
955,749 - +1.1
955,750 + +0.3
955,751 - +0.2
956,039 + -0.9
956,100 - +0.5
956,122 - +0.3
956,148 + +0.4
958,988 - -0.3
958,996 + +0.3
958,996 + +1.0
958,996 + +0.4
959,012 + +2.9
959,013 - +0.6
959,017 + +0.7
959,139 - -0.3
959,147 - +0.1
959,155 + +0.4
959,164 + +1.3
959,189 + +0.3
959,221 + +0.5
959,233 + -0.0
959,298 - +0.3
959,334 - +1.3
959,354 - -1.1
959,355 - +1.6
959,357 + -0.0
959,391 - -0.0
959,396 - -0.1
959,438 + -0.9
959,443 - +0.6
959,454 + +2.1
959,472 - +1.6
959,646 - 16105 mRNA_7737 0.16 +1.3
959,726 - 16105 mRNA_7737 0.26 +3.2
959,874 + 16105 mRNA_7737 0.45 -1.2

Or see this region's nucleotide sequence