Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7759

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16126 and 16127 are separated by 194 nucleotides mRNA_7758: 16126 - ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257, at 999,313 to 1,000,093 16126 mRNA_7759: 16127 - K11824 AP2A AP-2 complex subunit alpha, at 1,000,288 to 1,003,990 16127

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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999,534 + 16126 mRNA_7758 0.28 -0.5
999,694 - 16126 mRNA_7758 0.49 -0.1
999,700 - 16126 mRNA_7758 0.50 +0.1
999,792 - 16126 mRNA_7758 0.61 +0.2
999,828 - 16126 mRNA_7758 0.66 -0.6
999,838 - 16126 mRNA_7758 0.67 +1.8
1,000,174 + -0.8
1,000,430 + +1.3
1,000,568 + +1.5
1,000,899 + 16127 mRNA_7759 0.17 -1.9
1,001,586 + 16127 mRNA_7759 0.35 +0.3
1,001,674 + 16127 mRNA_7759 0.37 +0.2
1,001,889 - 16127 mRNA_7759 0.43 +0.2
1,002,110 + 16127 mRNA_7759 0.49 -0.9
1,002,462 - 16127 mRNA_7759 0.59 -0.0
1,002,897 - 16127 mRNA_7759 0.70 +0.1
1,003,646 + +0.0
1,003,927 + +3.6
1,003,933 + +1.6
1,004,074 - +2.1
1,004,201 - +1.3
1,004,206 + +0.4
1,004,234 - +0.2
1,004,342 + -0.6

Or see this region's nucleotide sequence