Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7773

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16140 and 16141 are separated by 413 nucleotides16141 and 16142 are separated by 194 nucleotides mRNA_7772: 16140 - Hypothetical Protein, at 1,030,603 to 1,031,384 16140 mRNA_7773: 16141 - K12857 SNRNP40, PRP8BP Prp8 binding protein, at 1,031,798 to 1,033,403 16141 mRNA_7774: 16142 - KOG1546 Metacaspase involved in regulation of apoptosis, at 1,033,598 to 1,035,909 16142

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,030,913 - 16140 mRNA_7772 0.40 +0.7
1,031,531 - +0.0
1,031,538 + +0.4
1,031,554 + +0.8
1,031,822 + +1.4
1,031,822 - +0.2
1,031,826 + +0.1
1,031,830 - -0.0
1,031,846 + +0.7
1,031,969 - 16141 mRNA_7773 0.11 +0.7
1,031,979 + 16141 mRNA_7773 0.11 +0.5
1,032,258 + 16141 mRNA_7773 0.29 +0.9
1,032,272 + 16141 mRNA_7773 0.30 +1.6
1,032,410 - 16141 mRNA_7773 0.38 +1.2
1,032,528 - 16141 mRNA_7773 0.45 +2.5
1,032,853 + 16141 mRNA_7773 0.66 +0.2
1,033,127 + 16141 mRNA_7773 0.83 +0.3
1,033,257 + -0.7
1,033,394 - +0.5
1,033,543 + +0.3
1,033,560 + +0.6
1,033,702 - -0.9
1,033,711 + +1.2
1,033,714 - -0.5
1,033,984 - 16142 mRNA_7774 0.17 -1.0
1,033,997 + 16142 mRNA_7774 0.17 -0.3

Or see this region's nucleotide sequence