Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7863

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16230 and 16231 are separated by 113 nucleotides mRNA_7862: 16230 - Hypothetical Protein, at 1,246,928 to 1,249,617 16230 mRNA_7863: 16231 - K11407 HDAC6 histone deacetylase 6, at 1,249,731 to 1,253,390 16231

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,248,767 - 16230 mRNA_7862 0.68 -0.7
1,248,827 + 16230 mRNA_7862 0.71 -1.4
1,249,500 + +0.5
1,249,690 - -1.7
1,249,805 + +1.5
1,249,826 - +1.0
1,249,912 + -1.1
1,253,449 + +0.7
1,253,449 - -0.4
1,253,450 + +0.1
1,253,456 + +0.1
1,253,459 - +1.1
1,253,461 - +2.8
1,253,464 - +0.3
1,253,468 - -0.3
1,253,470 + -0.3
1,253,474 + -0.9
1,253,564 - -0.2
1,253,580 - +0.7
1,253,588 - +1.8
1,253,631 + +0.1
1,253,637 + +0.9
1,253,750 - +1.7
1,253,761 - +0.4
1,253,763 - +0.1
1,253,772 + +0.2
1,253,778 - -0.0
1,253,785 + +0.9
1,253,785 + -0.2
1,253,786 - +0.2
1,253,793 + -0.7
1,253,800 - -0.7
1,253,804 + -0.3
1,253,812 - +0.1
1,253,819 + -1.7
1,253,841 - +2.0
1,253,842 - -0.7
1,253,844 + -0.5
1,253,848 + +2.0
1,253,866 - +2.5
1,253,867 + +0.5
1,253,868 + +2.2
1,253,997 + +0.3
1,254,010 + +1.2
1,254,022 + +0.4
1,254,027 - +0.3
1,254,029 - +1.5
1,254,042 + -1.2
1,254,094 - -2.4
1,254,130 - +0.2
1,254,149 + +2.1
1,254,308 + +1.6

Or see this region's nucleotide sequence