Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7874

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16241 and 16242 are separated by 147 nucleotides16242 and 16243 are separated by 438 nucleotides mRNA_7873: 16241 - K10258 TER, TSC13, CER10 very-long-chain enoyl-CoA reductase, at 1,272,427 to 1,274,098 16241 mRNA_7874: 16242 - K02202 CDK7 cyclin-dependent kinase 7, at 1,274,246 to 1,275,705 16242 mRNA_7875: 16243 - HMMPfam-Protein of unknown function (DUF4246)-PF14033, at 1,276,144 to 1,278,283 16243

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,274,074 + -0.8
1,275,549 - 16242 mRNA_7874 0.89 +0.1
1,275,796 - +0.2
1,275,839 + +2.5
1,275,887 + +1.6
1,275,888 + +1.3
1,275,903 - +1.3
1,275,926 + -1.1
1,275,934 + +1.1
1,275,941 + +0.0
1,275,944 - -1.9
1,275,949 + +1.5
1,275,952 - +0.8
1,275,952 - +1.8
1,275,967 + +0.2
1,275,975 + -0.1
1,275,977 - +0.3
1,276,030 - +1.0
1,276,042 + +0.7
1,276,043 + -0.6
1,276,053 - +2.5
1,276,066 + -0.5
1,276,073 - -0.1
1,276,076 - -1.7
1,276,078 - +0.1
1,276,083 + -0.2
1,276,088 - -0.2
1,276,106 - +0.7
1,276,109 + +0.2
1,276,119 + +0.1
1,276,137 - +0.0
1,276,242 - +0.7
1,276,249 + -1.2
1,276,281 - -0.3
1,276,363 + 16243 mRNA_7875 0.10 +1.9
1,276,382 + 16243 mRNA_7875 0.11 -0.4
1,276,528 - 16243 mRNA_7875 0.18 -1.2
1,276,587 + 16243 mRNA_7875 0.21 -1.0

Or see this region's nucleotide sequence