Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7905

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16272 and 16273 are separated by 416 nucleotides16273 and 16274 are separated by 797 nucleotides mRNA_7904: 16272 - Hypothetical Protein, at 1,342,830 to 1,343,789 16272 mRNA_7905: 16273 - K00147 proA glutamate-5-semialdehyde dehydrogenase, at 1,344,206 to 1,345,846 16273 mRNA_7906: 16274 - BLAST Protein of unknown function [Pyronema omphalodes CBS ..., at 1,346,644 to 1,348,770 16274

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,343,274 - 16272 mRNA_7904 0.46 +0.2
1,343,565 - 16272 mRNA_7904 0.77 +0.7
1,343,571 - 16272 mRNA_7904 0.77 +1.5
1,343,669 + 16272 mRNA_7904 0.87 +1.3
1,343,705 - +0.3
1,343,725 + -0.4
1,343,730 + +1.3
1,343,817 - -0.2
1,343,820 + +1.6
1,343,845 + -0.1
1,343,847 - +0.8
1,343,869 + -0.3
1,343,901 - +1.3
1,344,107 - +0.6
1,344,120 - +0.7
1,344,122 - +0.5
1,344,125 + +1.0
1,344,128 - +0.3
1,344,138 - +0.9
1,344,146 - +0.0
1,344,163 - +0.6
1,344,167 + +0.7
1,344,614 - 16273 mRNA_7905 0.25 -1.3
1,344,846 + 16273 mRNA_7905 0.39 +0.4
1,345,846 + -0.1
1,345,851 + -0.3
1,345,851 - +1.3
1,345,864 - +0.9
1,345,882 + +0.4
1,345,887 - +0.5
1,345,907 - +0.1
1,345,923 + +0.3
1,345,982 - +0.3
1,345,984 - -0.0
1,345,995 - +0.6
1,346,003 + -0.4
1,346,019 + -0.6
1,346,022 + +1.4
1,346,089 - +0.3
1,346,146 + +0.2
1,346,162 + -1.1
1,346,188 + -0.5
1,346,266 - +0.9
1,346,281 - +0.5
1,346,282 - +0.1
1,346,301 + +0.4
1,346,302 + +1.1
1,346,323 - -0.1
1,346,335 + -0.3
1,346,360 - -0.0
1,346,379 - +1.1
1,346,400 + -0.4
1,346,410 + +1.2
1,346,460 - +1.2
1,346,596 + +0.7
1,346,597 - +0.3
1,346,601 + -0.1
1,346,608 + +0.5
1,346,612 - +1.1
1,346,762 + +1.6
1,346,775 + -0.6

Or see this region's nucleotide sequence