Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7907

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16274 and 16275 are separated by 127 nucleotides16275 and 16276 are separated by 641 nucleotides mRNA_7906: 16274 - BLAST Protein of unknown function [Pyronema omphalodes CBS ..., at 1,346,644 to 1,348,770 16274 mRNA_7907: 16275 - K14951 ATP13A3_4_5 cation-transporting ATPase 13A3/4/5, at 1,348,898 to 1,356,379 16275 mRNA_7908: 16276 - K03783 punA, PNP purine-nucleoside phosphorylase, at 1,357,021 to 1,359,036 16276

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,347,923 - 16274 mRNA_7906 0.60 +0.5
1,347,929 - 16274 mRNA_7906 0.60 +0.4
1,348,103 - 16274 mRNA_7906 0.69 +1.0
1,348,120 - 16274 mRNA_7906 0.69 +2.3
1,348,121 - 16274 mRNA_7906 0.69 +0.1
1,348,224 + 16274 mRNA_7906 0.74 +1.2
1,348,299 - 16274 mRNA_7906 0.78 +0.1
1,348,304 + 16274 mRNA_7906 0.78 +1.8
1,348,433 + 16274 mRNA_7906 0.84 -0.3
1,348,706 - +1.7
1,348,720 + -0.8
1,348,760 - -0.6
1,350,609 + 16275 mRNA_7907 0.23 +1.2
1,350,621 - 16275 mRNA_7907 0.23 +0.6
1,350,626 + 16275 mRNA_7907 0.23 +0.3
1,350,889 - 16275 mRNA_7907 0.27 -0.1
1,350,898 - 16275 mRNA_7907 0.27 -0.6
1,350,910 - 16275 mRNA_7907 0.27 -0.1
1,351,170 + 16275 mRNA_7907 0.30 -0.4
1,351,174 + 16275 mRNA_7907 0.30 +0.6
1,351,335 + 16275 mRNA_7907 0.33 -0.9
1,351,387 - 16275 mRNA_7907 0.33 -1.6
1,352,075 - 16275 mRNA_7907 0.42 +0.9
1,352,080 - 16275 mRNA_7907 0.43 -0.8
1,352,090 + 16275 mRNA_7907 0.43 -1.7
1,352,100 + 16275 mRNA_7907 0.43 -1.9
1,352,275 - 16275 mRNA_7907 0.45 -1.0
1,352,275 + 16275 mRNA_7907 0.45 +0.5
1,352,429 + 16275 mRNA_7907 0.47 -0.2
1,352,533 - 16275 mRNA_7907 0.49 -2.1
1,352,533 - 16275 mRNA_7907 0.49 -0.7
1,352,533 - 16275 mRNA_7907 0.49 -1.8
1,352,797 - 16275 mRNA_7907 0.52 -0.5
1,352,933 + 16275 mRNA_7907 0.54 -2.6
1,352,945 - 16275 mRNA_7907 0.54 +0.4
1,352,951 - 16275 mRNA_7907 0.54 +0.7
1,353,121 + 16275 mRNA_7907 0.56 -1.0
1,353,161 - 16275 mRNA_7907 0.57 +1.0
1,353,296 - 16275 mRNA_7907 0.59 -0.1
1,353,426 + 16275 mRNA_7907 0.61 +1.1
1,353,441 - 16275 mRNA_7907 0.61 -2.4
1,354,163 - 16275 mRNA_7907 0.70 -1.4
1,354,191 + 16275 mRNA_7907 0.71 -1.2
1,354,318 + 16275 mRNA_7907 0.72 -0.1
1,354,602 + 16275 mRNA_7907 0.76 -2.0
1,354,620 + 16275 mRNA_7907 0.76 -2.3
1,354,836 - 16275 mRNA_7907 0.79 -1.6
1,354,890 - 16275 mRNA_7907 0.80 -1.9
1,354,893 - 16275 mRNA_7907 0.80 -1.6
1,354,907 + 16275 mRNA_7907 0.80 -1.3
1,354,941 + 16275 mRNA_7907 0.81 -1.0
1,355,184 + 16275 mRNA_7907 0.84 +1.7
1,355,343 - 16275 mRNA_7907 0.86 +0.1
1,355,374 + 16275 mRNA_7907 0.87 +0.1
1,355,490 - 16275 mRNA_7907 0.88 +0.4
1,355,492 + 16275 mRNA_7907 0.88 -0.6
1,355,640 - -0.8
1,355,825 - -0.7
1,356,376 - -0.5
1,356,422 + -0.3
1,356,501 - -0.2
1,356,521 + -3.0
1,356,522 - -1.5
1,356,668 + -0.1
1,356,775 - -1.0
1,356,775 - +0.6
1,356,814 + +1.8
1,356,823 - -1.4
1,356,925 - -1.1
1,356,925 - +1.9
1,356,926 + +0.1
1,356,964 + -0.2
1,357,096 + -0.2
1,357,117 - -1.3
1,357,252 - 16276 mRNA_7908 0.11 -0.6
1,357,257 - 16276 mRNA_7908 0.12 +0.2
1,357,258 + 16276 mRNA_7908 0.12 +1.9

Or see this region's nucleotide sequence