Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7911

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16279 and 16280 are separated by 760 nucleotides mRNA_7911: 16279 - K03015 RPB7, POLR2G DNA-directed RNA polymerase II subunit RPB7, at 1,441 to 2,386 16279 mRNA_7912: 16280 - K11434 PRMT1 type I protein arginine methyltransferase, at 3,147 to 4,682 16280

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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453 + +0.9
453 + +0.6
464 + +2.2
486 + +0.9
682 - +1.8
711 + -0.3
735 + -0.3
746 + +0.4
768 + -0.1
872 - -0.1
1,045 - +0.1
1,166 + -1.0
2,601 - -0.2
2,624 + +0.8
2,636 - -0.1
2,650 - -0.4
2,781 + -0.3
2,783 - +0.9
2,928 + +1.0
2,928 + +0.9
2,928 + +1.0
2,929 + +0.2
2,934 - -0.2
2,947 - +2.1
2,951 + +1.6
2,951 + +0.5
2,954 - -0.4
3,110 + -0.1
3,236 + +1.1
3,375 - 16280 mRNA_7912 0.15 +1.7

Or see this region's nucleotide sequence