Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7959

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16326 and 16327 are separated by 395 nucleotides16327 and 16328 are separated by 244 nucleotides mRNA_7958: 16326 - Hypothetical Protein, at 100,793 to 101,343 16326 mRNA_7959: 16327 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 101,739 to 102,560 16327 mRNA_7960: 16328 - SUPERFAMILY--SSF144232, at 102,805 to 103,919 16328

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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100,759 - -0.3
101,390 - -2.5
101,438 - +1.8
101,548 + -0.2
101,595 - -0.3
101,697 + +1.3
101,699 + +0.6
101,707 + +2.6
101,834 + 16327 mRNA_7959 0.12 -0.5
101,905 + 16327 mRNA_7959 0.20 +1.7
101,907 - 16327 mRNA_7959 0.20 +0.7
102,169 - 16327 mRNA_7959 0.52 -0.2
102,349 - 16327 mRNA_7959 0.74 -0.7
102,457 + 16327 mRNA_7959 0.87 +1.0
102,497 - +0.6
102,660 - +0.1
102,661 + -2.4
102,739 + +1.4
102,745 + +2.9
102,748 - -0.4
102,748 - +0.4
102,752 + +0.1
102,776 + +0.8
102,956 + 16328 mRNA_7960 0.14 +0.6
103,021 - 16328 mRNA_7960 0.19 -0.8
103,060 + 16328 mRNA_7960 0.23 -0.4
103,094 + 16328 mRNA_7960 0.26 +0.0
103,249 + 16328 mRNA_7960 0.40 +0.0
103,249 + 16328 mRNA_7960 0.40 +0.5
103,297 + 16328 mRNA_7960 0.44 +0.7
103,300 + 16328 mRNA_7960 0.44 +0.3
103,303 + 16328 mRNA_7960 0.45 -0.6
103,326 - 16328 mRNA_7960 0.47 +1.2

Or see this region's nucleotide sequence