Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7984

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16351 and 16352 are separated by 269 nucleotides16352 and 16353 are separated by 147 nucleotides mRNA_7983: 16351 - K11495 CENPA histone H3-like centromeric protein A, at 146,658 to 147,555 16351 mRNA_7984: 16352 - KOG3030 Lipid phosphate phosphatase and related enzymes of the PAP2 family, at 147,825 to 148,945 16352 mRNA_7985: 16353 - K15440 TAD1, ADAT1 tRNA-specific adenosine deaminase 1, at 149,093 to 150,954 16353

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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147,774 + -1.4
147,849 + +2.3
148,161 - 16352 mRNA_7984 0.30 -0.2
148,166 + 16352 mRNA_7984 0.30 +2.1
148,446 - 16352 mRNA_7984 0.55 +0.1
148,454 + 16352 mRNA_7984 0.56 +0.6
148,459 + 16352 mRNA_7984 0.57 -2.5
148,763 - 16352 mRNA_7984 0.84 -0.6
148,902 - -0.1
148,919 + +0.2
149,043 - +0.7
149,044 - -1.9
149,046 + -0.4
149,046 - +0.3
149,064 + +0.0
149,090 + -0.3
149,335 + 16353 mRNA_7985 0.13 +2.5
149,401 + 16353 mRNA_7985 0.17 +0.1
149,522 + 16353 mRNA_7985 0.23 +0.3
149,527 - 16353 mRNA_7985 0.23 +0.8
149,660 - 16353 mRNA_7985 0.30 +2.8
149,674 + 16353 mRNA_7985 0.31 +1.3

Or see this region's nucleotide sequence