Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7988

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16355 and 16356 are separated by 292 nucleotides16356 and 16357 are separated by 644 nucleotides mRNA_7987: 16355 - SUPERFAMILY--SSF144232, at 155,023 to 156,185 16355 mRNA_7988: 16356 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 156,478 to 157,308 16356 mRNA_7989: 16357 - HMMPfam-MYND finger-PF01753,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 157,953 to 158,694 16357

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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155,478 - 16355 mRNA_7987 0.39 -0.0
155,499 - 16355 mRNA_7987 0.41 -0.9
155,526 - 16355 mRNA_7987 0.43 +0.1
155,535 + 16355 mRNA_7987 0.44 -1.6
155,540 + 16355 mRNA_7987 0.44 -0.2
155,641 + 16355 mRNA_7987 0.53 +1.4
155,812 + 16355 mRNA_7987 0.68 -0.1
155,825 + 16355 mRNA_7987 0.69 +1.2
155,833 + 16355 mRNA_7987 0.70 -0.1
155,838 - 16355 mRNA_7987 0.70 -0.1
155,974 + 16355 mRNA_7987 0.82 +0.4
155,996 - 16355 mRNA_7987 0.84 -0.2
156,106 - +1.0
156,110 + -0.0
156,116 - +2.2
156,162 + -0.7
156,186 + -0.2
156,255 + +0.5
156,259 + -0.1
156,278 + -0.1
156,280 + -0.1
156,281 - +0.5
156,282 + +0.1
156,293 + +0.6
156,294 + -1.1
156,312 + +1.3
156,420 - +2.0
156,683 - 16356 mRNA_7988 0.25 +0.2
156,712 + 16356 mRNA_7988 0.28 +0.2
156,723 - 16356 mRNA_7988 0.29 -0.7
156,803 + 16356 mRNA_7988 0.39 +0.4
156,850 - 16356 mRNA_7988 0.45 -0.9
157,027 + 16356 mRNA_7988 0.66 +0.9
157,027 + 16356 mRNA_7988 0.66 +0.0
157,302 + -0.6
157,413 - -0.1
157,439 + +0.9
157,441 - +0.2
157,863 + +0.1
158,048 + 16357 mRNA_7989 0.13 +2.5
158,202 - 16357 mRNA_7989 0.34 +0.4
158,204 + 16357 mRNA_7989 0.34 +1.2
158,281 + 16357 mRNA_7989 0.44 -0.1

Or see this region's nucleotide sequence