Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7990

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16357 and 16358 are separated by 554 nucleotides mRNA_7989: 16357 - HMMPfam-MYND finger-PF01753,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 157,953 to 158,694 16357 mRNA_7990: 16358 - Hypothetical Protein, at 159,249 to 159,873 16358

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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158,281 + 16357 mRNA_7989 0.44 -0.1
158,327 + 16357 mRNA_7989 0.50 +0.5
158,566 + 16357 mRNA_7989 0.83 +1.5
158,628 + +0.3
158,762 + +1.9
158,783 + -1.5
158,864 - +0.0
158,923 + -0.5
158,925 + +1.0
159,209 - +0.2
159,246 - +0.3
159,352 - 16358 mRNA_7990 0.16 +0.4
159,364 + 16358 mRNA_7990 0.18 +0.6
159,484 + 16358 mRNA_7990 0.38 +2.4
159,922 + -0.5
160,312 - +0.3
160,349 + +2.5
160,362 + -0.4
160,620 + -0.1
160,654 - -0.5
160,655 + -0.3
160,666 + -0.5
160,748 - +1.0
160,812 + +1.3
160,816 + +0.4
160,823 + +0.1
160,824 + +1.1
160,834 - +1.0
160,834 - +1.0
160,836 + +0.1
160,838 - -0.3
160,843 + +0.2
160,852 - +1.3
160,858 + +0.2
160,858 + +0.2

Or see this region's nucleotide sequence