Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7992

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16359 and 16360 are separated by 512 nucleotides16360 and 16361 are separated by 95 nucleotides mRNA_7991: 16359 - K02132 ATPeF1A, ATP5A1, ATP1 F-type H+-transporting ATPase subunit alpha, at 160,884 to 163,546 16359 mRNA_7992: 16360 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 164,059 to 164,941 16360 mRNA_7993: 16361 - Hypothetical Protein, at 165,037 to 166,382 16361

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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163,573 + +1.5
163,616 - +0.2
163,747 - -1.0
163,756 + -0.4
164,105 - +0.6
164,109 - +1.0
164,184 + 16360 mRNA_7992 0.14 -0.3
164,412 - 16360 mRNA_7992 0.40 +0.1
164,716 - 16360 mRNA_7992 0.74 -0.6
164,840 + 16360 mRNA_7992 0.88 -0.1
164,854 - -0.3
165,128 - +0.1
165,166 + -0.2
165,299 + 16361 mRNA_7993 0.19 +0.1
165,339 + 16361 mRNA_7993 0.22 -0.4
165,437 - 16361 mRNA_7993 0.30 +1.1
165,462 - 16361 mRNA_7993 0.32 -1.0
165,559 + 16361 mRNA_7993 0.39 +1.0
165,758 - 16361 mRNA_7993 0.54 +0.9

Or see this region's nucleotide sequence