Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8018

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16385 and 16386 are separated by 911 nucleotides mRNA_8017: 16385 - K11087 SNRPD1, SMD1 small nuclear ribonucleoprotein D1, at 218,888 to 219,506 16385 mRNA_8018: 16386 - Hypothetical Protein, at 220,418 to 221,008 16386

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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220,018 - -0.8
220,029 - +0.5
220,032 - +0.0
220,035 - +1.9
220,043 + -0.2
220,045 + +0.0
220,060 + -0.2
220,638 + 16386 mRNA_8018 0.37 +1.8
220,725 - 16386 mRNA_8018 0.52 +1.2
220,870 + 16386 mRNA_8018 0.76 +1.9
220,912 - 16386 mRNA_8018 0.84 +2.1
221,023 + +1.4
221,023 + -0.4
221,165 + +0.6
221,321 + +0.3
221,330 - +0.0
221,587 - +0.3
221,717 - -0.1
221,785 - +1.5

Or see this region's nucleotide sequence