Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8034

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16402 and 16403 are separated by 259 nucleotides mRNA_8034: 16402 - K00898 PDK2_3_4 pyruvate dehydrogenase kinase 2/3/4, at 272,460 to 275,670 16402 mRNA_8035: 16403 - KOG4350 Uncharacterized conserved protein, contains BTB/POZ domain, at 275,930 to 278,853 16403

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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271,576 + -0.4
271,616 - -0.1
271,624 - +0.2
271,624 - +1.2
271,751 + +0.1
271,769 - +0.9
271,783 + +0.9
271,789 + -0.2
271,805 + +1.1
271,842 + +2.1
271,882 + +0.2
271,888 - -0.1
271,920 - +0.4
271,923 + -0.6
271,939 + +0.3
271,943 - -0.2
272,097 + -0.4
272,099 - +1.4
272,247 + +1.5
272,253 - +0.7
272,348 + -0.2
272,372 - +1.0
272,374 - +2.0
272,518 - -0.2
272,537 + -1.5
272,643 + +1.4
272,649 - -0.0
272,686 - -1.6
272,694 - -0.4
272,704 + +2.0
272,795 - 16402 mRNA_8034 0.10 -1.4
272,800 + 16402 mRNA_8034 0.11 +2.1
272,803 + 16402 mRNA_8034 0.11 -0.6
272,805 + 16402 mRNA_8034 0.11 +1.2
272,826 - 16402 mRNA_8034 0.11 -0.4
272,847 + 16402 mRNA_8034 0.12 -0.3
272,848 + 16402 mRNA_8034 0.12 +0.5
272,885 - 16402 mRNA_8034 0.13 +0.3
272,935 + 16402 mRNA_8034 0.15 -0.5
273,010 + 16402 mRNA_8034 0.17 +0.6
273,040 + 16402 mRNA_8034 0.18 +0.2
273,048 + 16402 mRNA_8034 0.18 -0.6
273,053 - 16402 mRNA_8034 0.18 -0.4
273,054 + 16402 mRNA_8034 0.18 +0.1
273,062 + 16402 mRNA_8034 0.19 -0.2
273,068 + 16402 mRNA_8034 0.19 -0.1
273,132 - 16402 mRNA_8034 0.21 -0.2
273,153 - 16402 mRNA_8034 0.22 -0.9
273,183 - 16402 mRNA_8034 0.23 +0.3
273,183 - 16402 mRNA_8034 0.23 -0.7
273,233 - 16402 mRNA_8034 0.24 -0.4
273,331 - 16402 mRNA_8034 0.27 -0.1
273,402 - 16402 mRNA_8034 0.29 -0.1
273,484 + 16402 mRNA_8034 0.32 -1.2
273,828 - 16402 mRNA_8034 0.43 +0.1
273,953 + 16402 mRNA_8034 0.46 +0.3
274,100 - 16402 mRNA_8034 0.51 -0.6
274,229 - 16402 mRNA_8034 0.55 +1.0
274,242 - 16402 mRNA_8034 0.55 -1.3
274,509 - 16402 mRNA_8034 0.64 -0.0
274,826 + 16402 mRNA_8034 0.74 +0.3
275,072 - 16402 mRNA_8034 0.81 +0.5
275,104 - 16402 mRNA_8034 0.82 -1.1
275,223 + 16402 mRNA_8034 0.86 +0.3
275,384 - -0.8
275,417 - +1.3
275,435 + -0.7
275,541 - -0.8
275,563 - -0.4
275,564 - +0.3
275,565 - -0.3
275,571 - +0.1
275,610 - -0.3
275,613 + -1.9
275,633 + +1.5
275,705 - +1.2
275,709 - +0.8
275,713 - +1.0
275,716 + +0.0
275,718 - -0.6
275,723 - +2.5
275,723 - +1.6
275,726 + +1.7
275,735 + -0.9
275,742 - -1.2
275,763 - -0.3
275,763 + +0.5
276,030 + -0.0
276,083 - -0.3
276,166 - +1.6
276,201 - -0.1
276,456 + 16403 mRNA_8035 0.18 +0.7
276,510 - 16403 mRNA_8035 0.20 -0.6

Or see this region's nucleotide sequence