Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8044

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16411 and 16412 are separated by 271 nucleotides16412 and 16413 are separated by 334 nucleotides mRNA_8043: 16411 - K15283 SLC35E1 solute carrier family 35, member E1, at 291,004 to 293,289 16411 mRNA_8044: 16412 - KOG4520 Predicted coiled-coil protein, at 293,561 to 294,571 16412 mRNA_8045: 16413 - Hypothetical Protein, at 294,906 to 295,366 16413

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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292,608 + 16411 mRNA_8043 0.70 -0.4
292,620 - 16411 mRNA_8043 0.71 -0.3
293,047 - 16411 mRNA_8043 0.89 +3.0
293,167 + +1.6
293,179 - -0.4
293,329 - +0.4
293,331 + -0.4
293,468 + -0.5
293,492 + -0.4
293,495 - +1.0
293,522 - +2.0
293,643 - -0.3
293,645 - -0.1
293,660 + -0.6
293,816 + 16412 mRNA_8044 0.25 +0.1
294,361 + 16412 mRNA_8044 0.79 -0.0
294,641 - -0.7
294,800 - -0.8
294,931 - +0.2
295,095 + 16413 mRNA_8045 0.41 +0.4
295,096 + 16413 mRNA_8045 0.41 -1.0
295,104 - 16413 mRNA_8045 0.43 -0.4
295,196 - 16413 mRNA_8045 0.63 +0.5
295,226 - 16413 mRNA_8045 0.69 +0.0
295,297 + 16413 mRNA_8045 0.85 +0.2
295,366 - -0.3
295,525 - -0.9

Or see this region's nucleotide sequence