Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8047

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16414 and 16415 are separated by 113 nucleotides16415 and 16416 are separated by 642 nucleotides mRNA_8046: 16414 - BLAST myosin tail domain protein [Rhizoctonia solani AG-3 R..., at 295,669 to 297,549 16414 mRNA_8047: 16415 - K08744 CRLS cardiolipin synthase (CMP-forming), at 297,663 to 298,822 16415 mRNA_8048: 16416 - Hypothetical Protein, at 299,465 to 299,980 16416

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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296,862 - 16414 mRNA_8046 0.63 -1.8
297,011 - 16414 mRNA_8046 0.71 -1.0
297,100 - 16414 mRNA_8046 0.76 +1.0
297,314 - 16414 mRNA_8046 0.87 +0.3
297,319 - 16414 mRNA_8046 0.88 -0.0
297,323 + 16414 mRNA_8046 0.88 -0.1
297,326 + 16414 mRNA_8046 0.88 +0.1
297,442 - +0.7
297,445 + -0.5
297,475 - +1.0
297,616 + -0.2
297,624 - +0.1
297,624 + +1.5
299,066 + +1.3
299,088 + -0.8
299,090 + -0.8
299,096 + +0.2
299,403 + -0.9
299,426 + -0.3
299,523 - 16416 mRNA_8048 0.11 -0.0
299,523 - 16416 mRNA_8048 0.11 -0.3
299,543 + 16416 mRNA_8048 0.15 +0.3
299,545 - 16416 mRNA_8048 0.16 -2.1
299,577 - 16416 mRNA_8048 0.22 +0.1

Or see this region's nucleotide sequence