Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8085

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16452 and 16453 are separated by 675 nucleotides16453 and 16454 are separated by 840 nucleotides mRNA_8084: 16452 - K05351 E1.1.1.9 D-xylulose reductase, at 381,463 to 383,498 16452 mRNA_8085: 16453 - HMMPfam-Glycosyltransferase sugar-binding region containing DXD motif-PF04488,SUPERFAMILY--SSF53448, at 384,174 to 386,638 16453 mRNA_8086: 16454 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 387,479 to 389,690 16454

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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383,183 + 16452 mRNA_8084 0.84 -0.8
383,490 - +0.2
383,491 + +0.4
383,507 + +0.2
383,616 + -0.2
383,621 + +0.3
383,621 + +0.0
383,636 + -0.4
383,639 + -0.8
383,640 - +0.9
383,642 + +0.2
383,653 + -0.0
383,654 - +1.9
383,658 + -0.4
383,660 + +0.8
383,710 - -0.5
383,710 + +1.6
383,721 - -0.0
383,722 - +0.6
383,748 - -0.3
383,750 + -1.3
383,755 + +1.1
383,781 - -1.4
383,913 - -0.5
384,070 + -1.6
384,079 + -1.4
385,064 + 16453 mRNA_8085 0.36 -0.7
385,374 - 16453 mRNA_8085 0.49 -0.0
386,656 + -0.5
386,833 + +0.9
386,861 + +0.8
386,967 - -0.6
386,973 - +1.0
386,983 - -0.3
386,987 - -0.6
386,990 - +1.0
386,995 + -1.2
387,000 - +0.7
387,002 + +2.8
387,005 + -0.2
387,006 - +0.2
387,006 - -0.9
387,011 + +0.0
387,014 + -0.1
387,021 + -0.1
387,023 + -0.3
387,024 - +0.1
387,024 - -0.0
387,024 - +1.7
387,025 + -0.7
387,040 + +0.1
387,045 + +0.6
387,073 - -1.5
387,135 - +1.9
387,206 - +0.2
387,298 + +0.2
387,312 - +0.7
387,313 - +0.8
387,325 - +1.2
387,341 - +1.6
387,439 + -0.1
387,461 + -0.4

Or see this region's nucleotide sequence