Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8087

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16455 and 16456 are separated by 296 nucleotides mRNA_8087: 16455 - ProSiteProfiles-BRCT domain profile.-PS50172,SUPERFAMILY--SSF52113, at 390,776 to 392,470 16455 mRNA_8088: 16456 - Hypothetical Protein, at 392,767 to 393,298 16456

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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389,789 + -0.4
389,932 - +0.4
389,939 - -0.3
389,939 - +1.0
389,946 + -0.2
389,948 + -0.2
390,071 - -0.0
390,083 - -0.4
390,090 + +0.0
390,107 - -0.7
390,114 - +0.2
390,117 + +0.8
390,128 - +0.1
390,134 + +0.1
390,136 + -0.6
390,137 + +0.7
390,139 + -0.4
390,139 + -1.2
390,141 - +1.5
390,141 + -0.4
390,142 - +1.8
390,142 + -0.5
390,143 + +0.0
390,145 + -1.2
390,599 + +0.6
390,748 + -0.6
390,869 + -0.3
390,888 + -0.7
391,045 + 16455 mRNA_8087 0.16 -0.2
391,157 - 16455 mRNA_8087 0.22 +0.5
391,618 + 16455 mRNA_8087 0.50 +0.1
392,470 - -0.7

Or see this region's nucleotide sequence