Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8121

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16489 and 16490 are separated by 32 nucleotides mRNA_8121: 16489 - Hypothetical Protein, at 470,033 to 470,823 16489 mRNA_8122: 16490 - K08010 NCF2, P67PHOX neutrophil cytosolic factor 2, at 470,856 to 473,193 16490

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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469,060 + +0.6
469,366 - +0.8
469,369 - -1.3
469,375 + -0.4
469,809 + +0.3
469,918 - -0.4
469,945 - +0.8
470,075 - -2.0
470,105 + +0.4
470,246 + 16489 mRNA_8121 0.27 +0.3
470,290 - 16489 mRNA_8121 0.32 -1.0
471,096 - 16490 mRNA_8122 0.10 -0.5
471,205 - 16490 mRNA_8122 0.15 +1.6

Or see this region's nucleotide sequence