Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8158

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16525 and 16526 are separated by 192 nucleotides16526 and 16527 are separated by 185 nucleotides mRNA_8157: 16525 - ProSiteProfiles-DOMON domain profile.-PS50836,ProSiteProfiles-Cytochrome b561 domain profile.-PS50939,SMART-Cytochrome b-561 / ferric reductase transmembrane domain.-SM00665,SUPERFAMILY--SSF49344, at 549,657 to 551,853 16525 mRNA_8158: 16526 - K14004 SEC13 protein transport protein SEC13, at 552,046 to 553,498 16526 mRNA_8159: 16527 - K17607 TIPRL, TIP41 type 2A phosphatase activator TIP41, at 553,684 to 555,009 16527

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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551,404 - 16525 mRNA_8157 0.80 +3.1
551,491 + 16525 mRNA_8157 0.83 -0.2
551,522 + 16525 mRNA_8157 0.85 -1.0
551,662 - +0.9
551,789 - +0.1
551,926 - +1.2
551,974 + -0.2
552,672 - 16526 mRNA_8158 0.43 -0.8
553,564 + -0.0
553,568 + +0.7
553,692 + +0.5
553,698 + -0.0
553,700 + +0.3
553,717 + -0.6
553,792 - +0.1
553,838 - 16527 mRNA_8159 0.12 -0.3
554,139 - 16527 mRNA_8159 0.34 -0.0
554,157 + 16527 mRNA_8159 0.36 -0.9
554,277 + 16527 mRNA_8159 0.45 -2.0
554,449 + 16527 mRNA_8159 0.58 +0.4

Or see this region's nucleotide sequence