Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8161

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16528 and 16529 are separated by 179 nucleotides16529 and 16530 are separated by 166 nucleotides mRNA_8160: 16528 - K01873 VARS, valS valyl-tRNA synthetase, at 555,144 to 559,347 16528 mRNA_8161: 16529 - BLAST Actin cytoskeleton-regulatory complex protein pan1 [R..., at 559,527 to 560,747 16529 mRNA_8162: 16530 - K01288 KEX1 carboxypeptidase D, at 560,914 to 563,494 16530

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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559,396 - -0.3
559,433 + +0.6
559,438 + -0.2
559,564 - +2.2
559,573 - +1.6
559,619 + -0.1
559,649 - 16529 mRNA_8161 0.10 +0.0
559,650 - 16529 mRNA_8161 0.10 +0.2
559,718 + 16529 mRNA_8161 0.16 -0.1
559,735 - 16529 mRNA_8161 0.17 +0.2
559,740 + 16529 mRNA_8161 0.17 +0.6
559,890 - 16529 mRNA_8161 0.30 -0.7
559,975 + 16529 mRNA_8161 0.37 -1.0
560,169 - 16529 mRNA_8161 0.53 +0.6
560,257 - 16529 mRNA_8161 0.60 +0.4
560,450 + 16529 mRNA_8161 0.76 -0.5
560,566 - 16529 mRNA_8161 0.85 -0.2
560,927 - +0.3
561,340 - 16530 mRNA_8162 0.17 -0.6
561,357 - 16530 mRNA_8162 0.17 -0.4
561,360 + 16530 mRNA_8162 0.17 +1.5
561,629 + 16530 mRNA_8162 0.28 -0.0
561,645 + 16530 mRNA_8162 0.28 -0.0

Or see this region's nucleotide sequence