Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8168

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16536 and 16537 are separated by 839 nucleotides mRNA_8168: 16536 - BLAST PQ-loop-domain-containing protein [Dichomitus squ..., at 580,110 to 581,600 16536 mRNA_8169: 16537 - HMMPfam-Anaphase-promoting complex, cyclosome, subunit 4-PF12896, at 582,440 to 584,866 16537

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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579,181 - +0.1
579,182 - +1.7
579,184 + +0.2
579,187 - -1.5
579,199 + +0.3
579,316 - +0.1
579,324 - -0.8
579,341 + +0.2
579,620 - +0.5
579,643 - +0.4
579,779 + -0.6
579,816 + +2.1
580,071 + +0.6
580,654 - 16536 mRNA_8168 0.36 -0.2
580,662 - 16536 mRNA_8168 0.37 +1.1
580,664 + 16536 mRNA_8168 0.37 -0.3
580,797 + 16536 mRNA_8168 0.46 +0.2
580,828 + 16536 mRNA_8168 0.48 +0.2
580,966 - 16536 mRNA_8168 0.57 +0.8
580,994 + 16536 mRNA_8168 0.59 +1.2
581,018 - 16536 mRNA_8168 0.61 -0.4
581,064 + 16536 mRNA_8168 0.64 +0.4
581,103 + 16536 mRNA_8168 0.67 +0.2
581,118 + 16536 mRNA_8168 0.68 +1.1
581,127 - 16536 mRNA_8168 0.68 +0.6
581,182 + 16536 mRNA_8168 0.72 +2.0
581,184 - 16536 mRNA_8168 0.72 -1.5
581,191 - 16536 mRNA_8168 0.73 +0.6
581,213 - 16536 mRNA_8168 0.74 +0.8
581,267 - 16536 mRNA_8168 0.78 -0.8
581,410 + 16536 mRNA_8168 0.87 -0.5
581,481 - +0.3
581,656 - -1.0
581,661 - +1.4
581,779 + +0.6
581,788 + +0.2
581,874 - +0.4
581,914 - -0.8
581,927 + +0.1
581,935 + +0.4
581,946 + +1.2
582,060 - +1.8
582,067 + -0.2
582,073 + -0.8
582,222 + -0.8
582,243 - -0.7
582,252 - +0.7
582,353 + -0.2
582,354 - +0.8
582,389 + +0.8

Or see this region's nucleotide sequence