Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8218

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16586 and 16587 are separated by 297 nucleotides mRNA_8218: 16586 - K02905 RP-L29e, RPL29 large subunit ribosomal protein L29e, at 697,887 to 698,253 16586 mRNA_8219: 16587 - K15202 GTF3C5, TFC1 general transcription factor 3C polypeptide 5 (transcription factor C subunit 1), at 698,551 to 700,808 16587

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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697,032 - +1.0
697,033 + -1.0
697,308 - +1.2
697,335 + +0.1
697,342 + -0.7
697,352 + +2.9
697,477 - -1.0
697,481 - -0.3
697,482 - -1.8
697,515 + -1.0
697,783 + -0.7
698,266 + -1.7
698,853 - 16587 mRNA_8219 0.13 +1.0
698,977 - 16587 mRNA_8219 0.19 -0.6
699,080 + 16587 mRNA_8219 0.23 -1.2

Or see this region's nucleotide sequence