Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8290

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16657 and 16658 are separated by 278 nucleotides16658 and 16659 are separated by 214 nucleotides mRNA_8289: 16657 - KOG1601 GATA-4/5/6 transcription factors, at 856,071 to 857,914 16657 mRNA_8290: 16658 - K02327 POLD1 DNA polymerase delta subunit 1, at 858,193 to 863,054 16658 mRNA_8291: 16659 - K00851 E2.7.1.12, gntK, idnK gluconokinase, at 863,269 to 864,250 16659

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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857,925 + -0.1
863,112 - +0.6
863,112 - +0.6
863,114 + -0.4
863,115 + +1.3
863,120 - +0.6
863,261 + +1.0
863,263 - +0.8
863,587 + 16659 mRNA_8291 0.32 +0.1
863,679 - 16659 mRNA_8291 0.42 +1.2
863,854 + 16659 mRNA_8291 0.60 +3.1

Or see this region's nucleotide sequence