Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8303

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16671 and 16672 are separated by 544 nucleotides mRNA_8303: 16671 - KOG1398 Uncharacterized conserved protein, at 890,417 to 892,180 16671 mRNA_8304: 16672 - K01336 E3.4.21.48 cerevisin, at 892,725 to 894,788 16672

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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889,450 + +2.5
889,568 + +1.0
890,144 - +0.0
890,153 + -0.3
890,289 + -0.5
890,455 + +0.8
890,703 + 16671 mRNA_8303 0.16 +1.6
890,733 + 16671 mRNA_8303 0.18 +0.0
891,049 - 16671 mRNA_8303 0.36 +0.5
891,321 + 16671 mRNA_8303 0.51 -0.5
891,324 - 16671 mRNA_8303 0.51 +1.1
891,359 + 16671 mRNA_8303 0.53 +1.2
891,479 + 16671 mRNA_8303 0.60 -1.0
891,599 + 16671 mRNA_8303 0.67 +0.8
891,771 - 16671 mRNA_8303 0.77 +0.2
891,916 - 16671 mRNA_8303 0.85 -0.4
891,933 + 16671 mRNA_8303 0.86 -0.2
892,209 + -0.3
892,217 + +1.7
892,237 + +1.1
892,339 - +0.9
892,373 - +0.2
892,374 + -0.1
892,384 - +1.6
892,393 - +0.7
892,394 - -0.6
892,395 - -1.3
892,404 - +0.2
892,410 + +1.3
892,499 - +1.9
892,506 + -0.7
892,532 + +0.6
892,556 - -0.2
892,660 - +0.2
892,660 - -0.6
892,661 + +1.4
892,669 - +1.1
892,669 + -0.4
892,671 - +1.3
892,678 - -0.1
892,689 - -0.5
892,802 - -0.3
892,814 + +0.5
892,816 + +1.5
892,826 - -0.2
892,831 - -0.9
892,831 - +2.9
892,864 + +0.8
892,865 + -1.0
892,872 - +0.3
892,954 + 16672 mRNA_8304 0.11 +1.9
892,968 - 16672 mRNA_8304 0.12 +0.0
892,996 + 16672 mRNA_8304 0.13 -0.0
892,997 + 16672 mRNA_8304 0.13 +0.7
892,999 + 16672 mRNA_8304 0.13 +0.1
893,033 + 16672 mRNA_8304 0.15 -0.8
893,123 - 16672 mRNA_8304 0.19 +0.7
893,125 - 16672 mRNA_8304 0.19 -0.4
893,128 + 16672 mRNA_8304 0.20 +0.2
893,133 - 16672 mRNA_8304 0.20 -0.2
893,139 + 16672 mRNA_8304 0.20 +0.0

Or see this region's nucleotide sequence