Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8314

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16681 and 16682 are separated by 933 nucleotides16682 and 16683 are separated by 626 nucleotides mRNA_8313: 16681 - K11541 URA2 carbamoyl-phosphate synthase / aspartate carbamoyltransferase, at 909,559 to 916,766 16681 mRNA_8314: 16682 - K03321 TC.SULP sulfate permease, SulP family, at 917,700 to 921,050 16682 mRNA_8315: 16683 - Hypothetical Protein, at 921,677 to 922,300 16683

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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916,992 - -0.4
916,998 + -1.4
917,000 + +1.1
917,014 + +2.0
917,141 + -0.0
917,143 - -1.0
917,147 - -0.9
917,159 + -0.5
917,169 + +2.1
917,171 + +0.2
917,198 + +0.4
917,304 + +1.1
917,331 - +0.2
917,331 + -0.5
917,356 - +1.2
917,439 + +0.4
917,442 - +0.0
917,445 + +0.1
917,446 - -1.2
917,453 - +2.0
917,460 - +0.2
917,493 - +0.6
917,493 - -0.5
917,495 + +0.3
917,498 - +0.3
917,499 + -1.0
917,502 - -0.6
917,506 + +1.9
917,514 - +0.1
917,573 + -0.2
917,649 - -2.0
917,918 - +2.1
918,097 + 16682 mRNA_8314 0.12 +1.3
918,102 - 16682 mRNA_8314 0.12 -1.2
918,369 - 16682 mRNA_8314 0.20 -0.2
918,507 + 16682 mRNA_8314 0.24 +0.7
918,666 - 16682 mRNA_8314 0.29 -0.3
918,800 - 16682 mRNA_8314 0.33 +0.7
918,802 - 16682 mRNA_8314 0.33 +2.4
918,809 + 16682 mRNA_8314 0.33 +0.5
919,083 + 16682 mRNA_8314 0.41 -0.4
919,664 - 16682 mRNA_8314 0.59 -0.4
919,807 - 16682 mRNA_8314 0.63 -0.0
920,120 + 16682 mRNA_8314 0.72 +0.7
920,278 + 16682 mRNA_8314 0.77 +0.0
920,430 + 16682 mRNA_8314 0.81 +0.4
920,566 - 16682 mRNA_8314 0.86 +1.3
921,186 + +1.3
921,490 + +1.8
921,619 - -0.1
921,631 - -1.1
921,643 - +2.2

Or see this region's nucleotide sequence