Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8332

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16699 and 16700 are separated by 107 nucleotides16700 and 16701 are separated by 364 nucleotides mRNA_8331: 16699 - K02604 ORC2 origin recognition complex subunit 2, at 955,011 to 956,688 16699 mRNA_8332: 16700 - K10082 LMAN2, VIP36 lectin, mannose-binding 2, at 956,796 to 958,192 16700 mRNA_8333: 16701 - SUPERFAMILY--SSF55781, at 958,557 to 960,459 16701

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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956,354 + 16699 mRNA_8331 0.80 -1.1
956,739 - +1.8
956,755 - +0.6
956,763 + -0.3
956,771 - +1.3
956,785 - -0.4
956,879 + +0.9
957,538 + 16700 mRNA_8332 0.53 +0.6
957,654 - 16700 mRNA_8332 0.61 +0.6
957,795 - 16700 mRNA_8332 0.72 +0.6
957,912 + 16700 mRNA_8332 0.80 +1.1
957,915 - 16700 mRNA_8332 0.80 -0.2
958,060 - +1.0
958,061 + +0.3
958,066 - +1.4
958,087 + +1.1
958,147 - +0.5
958,230 + +0.4
958,231 - +0.7
958,359 - -0.2
958,384 - -0.4
958,385 + +0.4
958,485 - -0.8
958,669 - -0.3
958,670 + +2.1
958,833 + 16701 mRNA_8333 0.15 +2.3
959,139 - 16701 mRNA_8333 0.31 +1.3

Or see this region's nucleotide sequence