Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8342

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16709 and 16710 are separated by 275 nucleotides16710 and 16711 are separated by 842 nucleotides mRNA_8341: 16709 - K14569 BMS1 ribosome biogenesis protein BMS1, at 977,558 to 981,587 16709 mRNA_8342: 16710 - Hypothetical Protein, at 981,863 to 982,243 16710 mRNA_8343: 16711 - Hypothetical Protein, at 983,086 to 983,598 16711

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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981,785 - -0.1
982,260 - +0.1
982,390 - +0.5
982,640 - +2.0
982,655 - -2.9
982,692 - -1.2
982,693 + -1.4
982,834 + +1.2
982,856 + -0.2
982,986 + +0.9
982,991 + +1.6
983,132 + -0.2
983,134 - -0.4
983,136 + -1.0
983,136 + +1.9
983,162 + 16711 mRNA_8343 0.15 +0.7

Or see this region's nucleotide sequence