Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8377

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16744 and 16745 are separated by 147 nucleotides16745 and 16746 are separated by 941 nucleotides mRNA_8376: 16744 - Hypothetical Protein, at 1,065,771 to 1,066,578 16744 mRNA_8377: 16745 - HMMPfam-Fungal specific transcription factor domain-PF04082, at 1,066,726 to 1,069,498 16745 mRNA_8378: 16746 - KOG0756 Mitochondrial tricarboxylate/dicarboxylate carrier proteins, at 1,070,440 to 1,071,948 16746

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,065,742 + +3.6
1,065,784 - -0.2
1,065,795 - -0.2
1,066,372 + 16744 mRNA_8376 0.74 +1.5
1,066,661 + +0.5
1,066,676 - +1.9
1,066,792 + +0.8
1,066,953 - -0.3
1,067,225 + 16745 mRNA_8377 0.18 +0.5
1,067,355 - 16745 mRNA_8377 0.23 +1.5
1,067,695 - 16745 mRNA_8377 0.35 +1.0
1,068,726 + 16745 mRNA_8377 0.72 -1.3
1,068,938 + 16745 mRNA_8377 0.80 +0.3
1,069,505 + +0.4
1,069,887 + +0.3
1,070,004 + +0.5
1,070,043 + -0.1
1,070,179 + -0.4
1,070,190 - -0.2
1,070,193 + -0.6
1,070,203 - -0.8
1,070,223 + +0.5
1,070,333 - +0.5
1,070,346 - +0.1

Or see this region's nucleotide sequence