Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8384

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16751 and 16752 are separated by 650 nucleotides16752 and 16753 are separated by 153 nucleotides mRNA_8383: 16751 - Interpro Stealth protein CR2, conserved region 2 Stealth protein CR3, conserved region 3, at 1,081,454 to 1,084,319 16751 mRNA_8384: 16752 - KOG4401 Uncharacterized conserved protein, at 1,084,970 to 1,085,744 16752 mRNA_8385: 16753 - HMMPfam-Protein of unknown function, DUF608-PF04685,HMMPfam-Bacterial alpha-L-rhamnosidase-PF05592,SUPERFAMILY--SSF48208, at 1,085,898 to 1,088,411 16753

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,084,308 + +0.3
1,084,390 + -0.0
1,084,552 + +0.0
1,084,657 + -0.5
1,084,710 - +1.2
1,084,765 - +0.9
1,084,820 - +0.0
1,084,820 - +0.6
1,084,910 - +1.5
1,084,913 + -1.0
1,085,191 - 16752 mRNA_8384 0.29 +1.0
1,085,199 - 16752 mRNA_8384 0.30 -0.3
1,085,301 + 16752 mRNA_8384 0.43 +1.4
1,085,342 - 16752 mRNA_8384 0.48 +0.4
1,085,350 + 16752 mRNA_8384 0.49 +0.2
1,085,351 + 16752 mRNA_8384 0.49 +1.0
1,085,532 - 16752 mRNA_8384 0.73 -0.3
1,085,542 + 16752 mRNA_8384 0.74 -0.3
1,085,656 - 16752 mRNA_8384 0.89 +1.5
1,085,775 - +0.7
1,085,915 + -0.5
1,086,221 - 16753 mRNA_8385 0.13 +0.3
1,086,221 - 16753 mRNA_8385 0.13 +0.8
1,086,392 + 16753 mRNA_8385 0.20 +0.1

Or see this region's nucleotide sequence