Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8421

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16788 and 16789 are separated by 31 nucleotides16789 and 16790 are separated by 262 nucleotides mRNA_8420: 16788 - SUPERFAMILY--SSF52047, at 1,181,811 to 1,183,583 16788 mRNA_8421: 16789 - K05285 PIGN phosphatidylinositol glycan, class N, at 1,183,615 to 1,187,180 16789 mRNA_8422: 16790 - K06675 SMC4 structural maintenance of chromosome 4, at 1,187,443 to 1,193,584 16790

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,182,630 - 16788 mRNA_8420 0.46 +0.7
1,182,778 + 16788 mRNA_8420 0.55 -0.0
1,182,904 + 16788 mRNA_8420 0.62 +0.5
1,182,967 - 16788 mRNA_8420 0.65 -1.2
1,182,983 + 16788 mRNA_8420 0.66 +0.2
1,183,039 - 16788 mRNA_8420 0.69 +0.6
1,183,097 + 16788 mRNA_8420 0.73 -0.4
1,183,118 + 16788 mRNA_8420 0.74 +0.8
1,183,119 + 16788 mRNA_8420 0.74 -0.9
1,183,189 - 16788 mRNA_8420 0.78 +0.1
1,183,192 - 16788 mRNA_8420 0.78 -0.2
1,183,198 - 16788 mRNA_8420 0.78 +0.6
1,183,209 + 16788 mRNA_8420 0.79 -0.6
1,183,220 + 16788 mRNA_8420 0.79 -0.5
1,183,231 - 16788 mRNA_8420 0.80 -0.2
1,183,249 + 16788 mRNA_8420 0.81 +0.7
1,183,440 + +0.5
1,183,456 - -0.5
1,183,551 + -0.0
1,183,646 - +1.5
1,183,782 - -0.6
1,183,981 + 16789 mRNA_8421 0.10 -0.0
1,184,385 + 16789 mRNA_8421 0.22 +0.0
1,184,504 + 16789 mRNA_8421 0.25 -0.4
1,184,719 + 16789 mRNA_8421 0.31 -0.4
1,184,721 - 16789 mRNA_8421 0.31 +0.1
1,184,752 - 16789 mRNA_8421 0.32 +1.9
1,184,834 + 16789 mRNA_8421 0.34 -0.0
1,185,006 - 16789 mRNA_8421 0.39 +0.1
1,185,227 + 16789 mRNA_8421 0.45 +1.5
1,185,325 + 16789 mRNA_8421 0.48 -0.9
1,185,332 - 16789 mRNA_8421 0.48 +2.8
1,185,390 + 16789 mRNA_8421 0.50 -1.3
1,185,390 + 16789 mRNA_8421 0.50 -0.3
1,185,449 - 16789 mRNA_8421 0.51 +0.8
1,185,455 + 16789 mRNA_8421 0.52 -0.0
1,185,457 - 16789 mRNA_8421 0.52 +0.3
1,185,460 + 16789 mRNA_8421 0.52 +1.4
1,185,600 - 16789 mRNA_8421 0.56 -0.5
1,185,749 - 16789 mRNA_8421 0.60 -0.7
1,185,750 + 16789 mRNA_8421 0.60 -0.1
1,185,869 + 16789 mRNA_8421 0.63 -2.4
1,185,893 + 16789 mRNA_8421 0.64 +1.3
1,186,030 - 16789 mRNA_8421 0.68 +0.7
1,186,037 + 16789 mRNA_8421 0.68 +1.0
1,186,098 - 16789 mRNA_8421 0.70 +0.4
1,186,142 - 16789 mRNA_8421 0.71 -0.2
1,186,204 - 16789 mRNA_8421 0.73 -0.3
1,186,314 + 16789 mRNA_8421 0.76 -0.2
1,186,463 + 16789 mRNA_8421 0.80 +0.5
1,186,514 + 16789 mRNA_8421 0.81 -1.1
1,186,589 - 16789 mRNA_8421 0.83 -0.5
1,186,626 + 16789 mRNA_8421 0.84 +0.2
1,186,627 + 16789 mRNA_8421 0.84 -0.4
1,186,637 - 16789 mRNA_8421 0.85 +0.3
1,186,779 - 16789 mRNA_8421 0.89 +1.3
1,186,887 - +0.5
1,186,909 - +1.0
1,186,936 + +1.1
1,187,192 - -0.2
1,187,213 - +0.3
1,187,247 + +0.9
1,187,280 + -0.1
1,187,330 - +0.9
1,187,384 + +0.1
1,187,392 - -0.8
1,187,400 + -0.7

Or see this region's nucleotide sequence