Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8449

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16816 and 16817 are separated by 160 nucleotides mRNA_8448: 16816 - HMMPfam-Protein of unknown function (DUF962)-PF06127, at 1,257,751 to 1,258,571 16816 mRNA_8449: 16817 - KOG0198 MEKK and related serine/threonine protein kinases, at 1,258,732 to 1,261,080 16817

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,257,732 + -0.1
1,257,740 - -0.7
1,257,742 + +0.7
1,257,774 + +0.2
1,257,802 - -2.2
1,257,829 - +0.5
1,257,854 + 16816 mRNA_8448 0.13 +0.2
1,257,854 + 16816 mRNA_8448 0.13 -0.1
1,257,883 + 16816 mRNA_8448 0.16 +0.2
1,257,915 + 16816 mRNA_8448 0.20 -0.2
1,257,922 + 16816 mRNA_8448 0.21 +1.6
1,257,940 + 16816 mRNA_8448 0.23 +1.0
1,258,009 - 16816 mRNA_8448 0.31 -0.8
1,258,020 - 16816 mRNA_8448 0.33 +0.8
1,258,033 + 16816 mRNA_8448 0.34 -0.2
1,258,135 + 16816 mRNA_8448 0.47 -0.1
1,258,167 + 16816 mRNA_8448 0.51 +0.1
1,258,290 - 16816 mRNA_8448 0.66 -0.3
1,258,301 - 16816 mRNA_8448 0.67 +0.3
1,258,315 + 16816 mRNA_8448 0.69 +0.3
1,258,318 + 16816 mRNA_8448 0.69 +1.5
1,258,328 + 16816 mRNA_8448 0.70 -0.1
1,258,454 + 16816 mRNA_8448 0.86 -0.6
1,258,456 - 16816 mRNA_8448 0.86 -0.4
1,258,725 - +0.8
1,258,887 - -0.1
1,258,918 + +0.0
1,259,072 + 16817 mRNA_8449 0.14 -0.9
1,259,111 - 16817 mRNA_8449 0.16 -1.1
1,259,359 + 16817 mRNA_8449 0.27 +0.7
1,259,360 - 16817 mRNA_8449 0.27 +1.3
1,259,374 - 16817 mRNA_8449 0.27 -1.0
1,259,434 + 16817 mRNA_8449 0.30 -0.6
1,259,551 - 16817 mRNA_8449 0.35 +0.5
1,259,579 + 16817 mRNA_8449 0.36 +2.0
1,259,636 + 16817 mRNA_8449 0.38 +0.5
1,259,645 + 16817 mRNA_8449 0.39 +0.1
1,259,849 - 16817 mRNA_8449 0.48 +0.1
1,259,858 - 16817 mRNA_8449 0.48 +1.4
1,259,958 + 16817 mRNA_8449 0.52 +0.1
1,259,972 - 16817 mRNA_8449 0.53 +0.9
1,260,099 - 16817 mRNA_8449 0.58 -0.6
1,260,106 - 16817 mRNA_8449 0.58 +0.4
1,260,116 + 16817 mRNA_8449 0.59 -1.3
1,260,162 + 16817 mRNA_8449 0.61 -0.7
1,260,217 + 16817 mRNA_8449 0.63 -0.3
1,260,220 - 16817 mRNA_8449 0.63 -1.0
1,260,290 + 16817 mRNA_8449 0.66 +1.5
1,260,361 + 16817 mRNA_8449 0.69 +1.0
1,260,567 + 16817 mRNA_8449 0.78 -1.6
1,260,573 - 16817 mRNA_8449 0.78 +0.5
1,260,584 + 16817 mRNA_8449 0.79 +0.2
1,260,712 + 16817 mRNA_8449 0.84 -0.2
1,260,717 + 16817 mRNA_8449 0.85 +1.7
1,260,965 - +1.1
1,261,130 - +0.2
1,261,271 + +1.4
1,261,440 + +0.1
1,261,442 - -0.0
1,261,443 + +0.2
1,261,592 + +0.2
1,261,631 + +0.5
1,261,835 - -1.6
1,261,846 + +0.6
1,261,849 - +0.2

Or see this region's nucleotide sequence