Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8479

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16846 and 16847 are separated by 109 nucleotides16847 and 16848 are separated by 377 nucleotides mRNA_8478: 16846 - HMMPfam-Alpha/beta hydrolase family-PF12697,SUPERFAMILY--SSF53474, at 1,321,525 to 1,322,743 16846 mRNA_8479: 16847 - Hypothetical Protein, at 1,322,853 to 1,323,925 16847 mRNA_8480: 16848 - KOG2174 Leptin receptor gene-related protein, at 1,324,303 to 1,324,895 16848

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,321,887 - 16846 mRNA_8478 0.30 +0.8
1,321,911 - 16846 mRNA_8478 0.32 -3.5
1,322,071 + 16846 mRNA_8478 0.45 -0.9
1,322,441 + 16846 mRNA_8478 0.75 +0.2
1,322,768 + -0.7
1,322,820 - +0.6
1,322,828 + +1.3
1,322,830 + +0.3
1,322,833 + -0.0
1,322,908 - -1.4
1,322,961 - 16847 mRNA_8479 0.10 -0.1
1,323,274 + 16847 mRNA_8479 0.39 +1.3
1,323,379 - 16847 mRNA_8479 0.49 -0.1
1,323,379 - 16847 mRNA_8479 0.49 -0.7
1,323,541 + 16847 mRNA_8479 0.64 -0.1
1,323,712 + 16847 mRNA_8479 0.80 +0.8
1,323,731 - 16847 mRNA_8479 0.82 +1.4
1,323,989 + -0.3
1,324,037 - -0.1
1,324,115 - +0.3
1,324,254 - +0.3
1,324,264 - -2.5
1,324,281 - -0.2
1,324,304 + -0.7
1,324,316 + +1.7
1,324,599 - 16848 mRNA_8480 0.50 +0.0
1,324,718 - 16848 mRNA_8480 0.70 +0.8
1,324,733 - 16848 mRNA_8480 0.73 -0.9
1,324,863 + -0.2

Or see this region's nucleotide sequence