Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8483

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16850 and 16851 are separated by 700 nucleotides16851 and 16852 are separated by 222 nucleotides mRNA_8482: 16850 - K00854 xylB, XYLB xylulokinase, at 1,328,574 to 1,331,754 16850 mRNA_8483: 16851 - BLAST GA28568 gene product from transcript GA28568-RA [Rhiz..., at 1,332,455 to 1,336,946 16851 mRNA_8484: 16852 - KOG0725 Reductases with broad range of substrate specificities, at 1,337,169 to 1,338,536 16852

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,331,553 + -0.1
1,331,672 + +1.9
1,331,770 - +1.2
1,331,834 + +0.6
1,331,893 + +1.6
1,331,958 + +1.5
1,331,961 - +2.5
1,332,064 - -1.0
1,332,110 - +2.1
1,332,111 - -0.6
1,332,236 - -0.4
1,332,244 + +1.5
1,332,255 + +0.1
1,332,255 + +0.4
1,332,255 + +0.6
1,332,257 - +0.6
1,332,351 + +1.0
1,332,382 + -0.3
1,332,395 + -0.1
1,332,489 + -0.4
1,332,497 + +1.8
1,332,633 + -0.7
1,332,813 + +0.9
1,332,856 - +0.2
1,333,158 - 16851 mRNA_8483 0.16 +2.0
1,333,309 + 16851 mRNA_8483 0.19 +0.4
1,333,338 + 16851 mRNA_8483 0.20 -1.3
1,333,456 - 16851 mRNA_8483 0.22 +1.5
1,333,477 + 16851 mRNA_8483 0.23 +1.5
1,333,563 + 16851 mRNA_8483 0.25 +2.7
1,333,588 + 16851 mRNA_8483 0.25 +2.2
1,333,631 - 16851 mRNA_8483 0.26 +0.6
1,333,787 + 16851 mRNA_8483 0.30 +1.0
1,333,896 + 16851 mRNA_8483 0.32 +1.5
1,333,898 - 16851 mRNA_8483 0.32 +1.0
1,333,978 - 16851 mRNA_8483 0.34 +0.0
1,334,034 - 16851 mRNA_8483 0.35 +0.2
1,334,040 + 16851 mRNA_8483 0.35 +0.1
1,334,048 + 16851 mRNA_8483 0.35 -0.5
1,334,101 - 16851 mRNA_8483 0.37 +0.8
1,334,168 + 16851 mRNA_8483 0.38 +0.7
1,334,291 + 16851 mRNA_8483 0.41 +0.4
1,334,294 - 16851 mRNA_8483 0.41 +1.9
1,334,295 + 16851 mRNA_8483 0.41 +1.8
1,334,517 + 16851 mRNA_8483 0.46 +0.7
1,334,523 - 16851 mRNA_8483 0.46 -0.5
1,334,626 - 16851 mRNA_8483 0.48 +0.1
1,334,661 - 16851 mRNA_8483 0.49 +0.1
1,334,751 + 16851 mRNA_8483 0.51 +0.9
1,334,837 - 16851 mRNA_8483 0.53 +1.3
1,334,843 - 16851 mRNA_8483 0.53 +0.8
1,334,860 + 16851 mRNA_8483 0.54 +2.1
1,334,867 - 16851 mRNA_8483 0.54 +0.9
1,335,075 - 16851 mRNA_8483 0.58 +1.2
1,335,112 - 16851 mRNA_8483 0.59 -0.5
1,335,146 - 16851 mRNA_8483 0.60 -1.0
1,335,272 + 16851 mRNA_8483 0.63 +0.5
1,335,432 + 16851 mRNA_8483 0.66 +0.1
1,335,553 + 16851 mRNA_8483 0.69 +1.6
1,335,952 + 16851 mRNA_8483 0.78 +2.7
1,335,962 - 16851 mRNA_8483 0.78 -0.6
1,336,113 + 16851 mRNA_8483 0.81 +0.5
1,336,285 - 16851 mRNA_8483 0.85 -0.6
1,336,305 + 16851 mRNA_8483 0.86 +0.0
1,336,308 + 16851 mRNA_8483 0.86 +0.8
1,336,431 - 16851 mRNA_8483 0.89 -0.1
1,336,438 - 16851 mRNA_8483 0.89 +1.9
1,336,446 + 16851 mRNA_8483 0.89 +1.1
1,336,523 - +0.8
1,336,527 + +0.6
1,336,738 - +1.5
1,336,999 + +0.3
1,336,999 + +0.0
1,337,004 - +0.3
1,337,028 + -0.5
1,337,075 - +0.6
1,337,081 - -0.9
1,337,088 + -0.0
1,337,134 + +0.0
1,337,153 + +1.5
1,337,245 - +1.6
1,337,266 + +0.6
1,337,269 + +0.0
1,337,269 + +2.3
1,337,291 - +0.7
1,337,352 - 16852 mRNA_8484 0.13 +2.6
1,337,361 + 16852 mRNA_8484 0.14 +0.2
1,337,416 - 16852 mRNA_8484 0.18 -0.4
1,337,475 + 16852 mRNA_8484 0.22 -0.1
1,337,613 + 16852 mRNA_8484 0.32 +1.7
1,337,860 - 16852 mRNA_8484 0.51 +1.9
1,337,861 + 16852 mRNA_8484 0.51 +0.6

Or see this region's nucleotide sequence