Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8375 and 8376 are separated by 222 nucleotides mRNA_7: 8375 - HMMPfam-LIM-domain binding protein-PF01803,PRINTS-Proline rich extensin signature-PR01217, at 20,174 to 22,955 8375 mRNA_8: 8376 - K01194 TREH, treA, treF alpha,alpha-trehalase, at 23,178 to 26,734 8376

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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22,251 + 8375 mRNA_7 0.75 +1.8
22,255 - 8375 mRNA_7 0.75 +1.2
22,314 - 8375 mRNA_7 0.77 -0.2
22,331 + 8375 mRNA_7 0.78 -0.8
22,673 + 8375 mRNA_7 0.90 -0.4
22,695 - -0.4
22,731 + +2.1
22,779 - -0.7
22,899 - +0.1
23,070 + +0.4
23,108 - +1.4
23,157 + -1.1
23,410 + -0.1
23,414 + -0.3
23,414 + +0.1
23,468 + -0.2
23,574 + 8376 mRNA_8 0.11 +1.2
23,579 - 8376 mRNA_8 0.11 -0.3
23,680 + 8376 mRNA_8 0.14 +0.8
23,808 + 8376 mRNA_8 0.18 +0.6
23,867 - 8376 mRNA_8 0.19 +0.7
23,948 - 8376 mRNA_8 0.22 +0.1
24,036 - 8376 mRNA_8 0.24 +0.6
24,203 - 8376 mRNA_8 0.29 -0.2
24,208 - 8376 mRNA_8 0.29 -0.6
24,405 + 8376 mRNA_8 0.34 +2.8
24,406 - 8376 mRNA_8 0.35 +1.3
24,407 + 8376 mRNA_8 0.35 +0.1
24,634 + 8376 mRNA_8 0.41 -2.0
24,636 - 8376 mRNA_8 0.41 +0.7
24,650 - 8376 mRNA_8 0.41 +0.0
24,748 + 8376 mRNA_8 0.44 +0.1
24,837 - 8376 mRNA_8 0.47 +0.2
24,935 + 8376 mRNA_8 0.49 -0.2
25,059 + 8376 mRNA_8 0.53 +0.8
25,103 - 8376 mRNA_8 0.54 +0.2
25,490 + 8376 mRNA_8 0.65 -1.6
25,499 + 8376 mRNA_8 0.65 -0.0
25,504 + 8376 mRNA_8 0.65 +2.3
25,545 - 8376 mRNA_8 0.67 +2.1
25,752 - 8376 mRNA_8 0.72 -0.3
26,125 - 8376 mRNA_8 0.83 +0.1
26,126 - 8376 mRNA_8 0.83 -0.2
26,245 - 8376 mRNA_8 0.86 +1.4
26,424 - +1.7
26,539 + +1.6
26,568 + -0.2
26,832 - +1.2
26,832 - +0.8
26,867 - -0.8
26,931 + -0.1
26,937 + -0.2
26,947 + +0.3
26,960 + -1.2
26,967 - +0.3
26,973 - -0.2
26,973 - +2.3
26,998 + -0.3
27,007 - +0.4
27,039 + +0.3
27,039 - +0.5
27,102 + -0.8
27,108 - +0.7
27,119 - +3.1
27,145 - +0.1
27,156 + -0.0
27,164 + -0.8
27,263 - -0.2
27,280 - +0.9
27,284 - +1.9
27,287 - +1.5
27,295 + +1.4
27,295 + +0.4
27,304 - +1.4
27,306 + +1.5
27,312 - +2.6
27,315 - -1.9
27,332 - +0.1
27,370 - +1.7
27,381 - +0.2
27,431 - -0.4
27,439 + +0.6
27,444 + -0.6
27,451 + +0.8
27,453 - +0.4

Or see this region's nucleotide sequence