Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_14

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt mRNA_14: 8382 - K07199 PRKAB 5'-AMP-activated protein kinase, regulatory beta subunit, at 36,682 to 38,243 8382

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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35,824 - -0.1
35,850 + -0.1
36,208 - +0.1
36,561 + +0.9
36,572 + -1.0
36,584 - +0.2
37,138 + 8382 mRNA_14 0.29 -1.6
37,280 - 8382 mRNA_14 0.38 +1.3
37,529 - 8382 mRNA_14 0.54 -1.3
37,562 + 8382 mRNA_14 0.56 -2.2
37,822 - 8382 mRNA_14 0.73 +1.1
38,153 + -1.8
38,294 - +1.1
38,429 - -0.1
38,433 - -0.2
38,535 + +1.1
38,596 + +0.3
38,601 - +1.7
38,607 - +2.7
38,620 - +0.4

Or see this region's nucleotide sequence