Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_25

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8393 and 8394 are separated by 561 nucleotides mRNA_25: 8393 - Hypothetical Protein, at 66,506 to 67,548 8393 mRNA_26: 8394 - K04499 RUVBL1, RVB1, INO80H RuvB-like protein 1 (pontin 52), at 68,110 to 69,853 8394

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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65,610 - +0.7
65,614 - +1.0
65,692 + -0.0
65,746 + +1.3
65,755 - -0.1
65,776 - +0.5
66,086 + +1.2
66,169 + -2.3
66,170 + -0.9
66,291 + +0.1
66,294 - -1.2
66,306 - +1.3
66,488 - +0.3
67,068 - 8393 mRNA_25 0.54 +0.6
67,098 + 8393 mRNA_25 0.57 -0.5
67,356 + 8393 mRNA_25 0.81 -1.3
67,387 + 8393 mRNA_25 0.84 -0.5
67,838 - +0.9
68,115 + -0.1
68,125 - -1.6

Or see this region's nucleotide sequence