Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_31

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8398 and 8399 are separated by 84 nucleotides8399 and 8400 are separated by 294 nucleotides mRNA_30: 8398 - KOG2798 Putative trehalase, at 75,069 to 76,780 8398 mRNA_31: 8399 - K01520 dut, DUT dUTP pyrophosphatase, at 76,865 to 77,832 8399 mRNA_32: 8400 - HMMPfam-Pre-rRNA-processing protein TSR2-PF10273, at 78,127 to 78,849 8400

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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75,957 - 8398 mRNA_30 0.52 -1.8
76,059 - 8398 mRNA_30 0.58 -1.0
76,215 + 8398 mRNA_30 0.67 +0.4
76,286 - 8398 mRNA_30 0.71 -0.1
76,460 - 8398 mRNA_30 0.81 -0.9
76,462 + 8398 mRNA_30 0.81 +0.5
76,521 - 8398 mRNA_30 0.85 +0.7
76,540 + 8398 mRNA_30 0.86 +0.9
76,598 - 8398 mRNA_30 0.89 -0.8
76,799 - +2.9
76,813 + -0.3
76,921 + -1.4
76,931 + +0.7
76,952 - -0.3
77,979 + -1.5
77,984 + +0.9
77,995 - +0.1

Or see this region's nucleotide sequence