Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_67

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8434 and 8435 are separated by 272 nucleotides8435 and 8436 are separated by 564 nucleotides mRNA_66: 8434 - K15118 SLC25A38 solute carrier family 25, member 38, at 154,666 to 156,000 8434 mRNA_67: 8435 - K05864 PPID, CYPD peptidyl-prolyl isomerase D, at 156,273 to 158,120 8435 mRNA_68: 8436 - K12599 SKI2, SKIV2L antiviral helicase SKI2, at 158,685 to 163,751 8436

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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155,507 + 8434 mRNA_66 0.63 -1.1
155,513 - 8434 mRNA_66 0.63 -0.7
155,516 + 8434 mRNA_66 0.64 -2.2
155,629 + 8434 mRNA_66 0.72 -1.4
155,729 + 8434 mRNA_66 0.80 -0.4
156,004 - -0.4
156,035 + -0.4
156,173 + +0.4
156,304 + +1.0
156,319 + +0.3
156,334 - +0.7
156,617 + 8435 mRNA_67 0.19 -2.2
157,257 - 8435 mRNA_67 0.53 +1.9
157,262 - 8435 mRNA_67 0.54 -0.4
157,297 - 8435 mRNA_67 0.55 +0.7
157,309 + 8435 mRNA_67 0.56 -0.2
157,309 + 8435 mRNA_67 0.56 +0.9
157,453 + 8435 mRNA_67 0.64 +0.8
157,467 - 8435 mRNA_67 0.65 +0.9
157,482 - 8435 mRNA_67 0.65 -0.6
157,655 + 8435 mRNA_67 0.75 -2.1
157,835 - 8435 mRNA_67 0.85 +1.0
157,966 - -1.4
158,031 + +0.1
158,054 + +0.4
158,069 - -0.3
158,176 + +0.3
158,177 - +1.3
158,179 - +0.5
158,183 - +0.2
158,192 - +0.1
158,193 + +0.2
158,193 + +0.1
158,196 - +0.4
158,296 + +0.5
158,320 - +1.0
158,333 + -0.2
158,341 - -0.5
158,347 - -0.2
158,387 + +0.9
158,636 + +0.5
158,639 - -0.2
158,650 - -0.0
158,678 + +1.0
158,949 - -0.4
159,101 - +2.1

Or see this region's nucleotide sequence