Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_81

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8448 and 8449 are separated by 263 nucleotides8449 and 8450 are separated by 477 nucleotides mRNA_80: 8448 - K04911 KCNH8 potassium voltage-gated channel Eag-related subfamily H member 8, at 189,215 to 191,649 8448 mRNA_81: 8449 - K12176 COPS2, CSN2, TRIP15 COP9 signalosome complex subunit 2, at 191,913 to 194,364 8449 mRNA_82: 8450 - KOG0519 Sensory transduction histidine kinase, at 194,842 to 197,479 8450

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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191,038 - 8448 mRNA_80 0.75 -0.3
191,240 - 8448 mRNA_80 0.83 -0.2
191,348 + 8448 mRNA_80 0.88 -0.1
191,501 + +1.2
191,522 + -0.1
191,690 + +2.0
191,721 + +0.8
191,810 + +0.7
192,102 + +0.5
192,128 + +0.5
192,564 - 8449 mRNA_81 0.27 -0.1
192,571 + 8449 mRNA_81 0.27 -0.4
193,463 + 8449 mRNA_81 0.63 -0.0
193,652 - 8449 mRNA_81 0.71 +1.9
194,112 - 8449 mRNA_81 0.90 +0.4
194,118 - 8449 mRNA_81 0.90 -0.2
194,119 - +0.8
194,129 + +1.5
194,145 + -1.1
194,431 - -0.7
194,435 - +1.6
194,573 - +0.1
194,719 + -0.3
194,722 - -0.2
194,723 + +0.7
194,723 - -0.2
194,739 + +0.3
194,755 + -0.7
194,890 - +0.2
194,890 - -0.2
194,901 + +0.9
195,049 - +0.3
195,329 + 8450 mRNA_82 0.18 -0.4
195,332 - 8450 mRNA_82 0.19 +0.8
195,355 + 8450 mRNA_82 0.19 -0.4

Or see this region's nucleotide sequence