Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_105

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8472 and 8473 are separated by 15 nucleotides8473 and 8474 are separated by 377 nucleotides mRNA_104: 8472 - Hypothetical Protein, at 250,227 to 251,681 8472 mRNA_105: 8473 - K08504 BET1 blocked early in transport 1, at 251,697 to 252,245 8473 mRNA_106: 8474 - K15201 GTP3C3, TFC4 general transcription factor 3C polypeptide 3 (transcription factor C subunit 4), at 252,623 to 256,756 8474

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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251,150 + 8472 mRNA_104 0.63 +0.6
251,214 + 8472 mRNA_104 0.68 +0.6
251,362 + 8472 mRNA_104 0.78 -0.5
251,403 + 8472 mRNA_104 0.81 -0.1
251,489 + 8472 mRNA_104 0.87 -0.5
251,552 + +1.2
252,568 - +0.3

Or see this region's nucleotide sequence