Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_117

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8484 and 8485 are separated by 555 nucleotides8485 and 8486 are separated by 336 nucleotides mRNA_116: 8484 - K06072 DOHH deoxyhypusine monooxygenase, at 275,050 to 276,428 8484 mRNA_117: 8485 - K14815 MRT4 mRNA turnover protein 4, at 276,984 to 278,095 8485 mRNA_118: 8486 - HMMPfam-Protein of unknown function (DUF1674)-PF07896, at 278,432 to 278,981 8486

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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276,615 + -0.6
276,747 - -0.8
276,907 - -0.0
278,191 + +0.9
278,224 - +0.4
278,359 + +0.6
278,653 + 8486 mRNA_118 0.40 +0.2
278,825 + 8486 mRNA_118 0.71 -0.3
279,060 + -0.1

Or see this region's nucleotide sequence