Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_118

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8485 and 8486 are separated by 336 nucleotides mRNA_117: 8485 - K14815 MRT4 mRNA turnover protein 4, at 276,984 to 278,095 8485 mRNA_118: 8486 - HMMPfam-Protein of unknown function (DUF1674)-PF07896, at 278,432 to 278,981 8486

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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278,191 + +0.9
278,224 - +0.4
278,359 + +0.6
278,653 + 8486 mRNA_118 0.40 +0.2
278,825 + 8486 mRNA_118 0.71 -0.3
279,060 + -0.1
279,113 + -0.0
279,141 - +1.4
279,399 - -0.7
279,687 - +0.6

Or see this region's nucleotide sequence