Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_121

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8488 and 8489 are separated by 155 nucleotides8489 and 8490 are separated by 316 nucleotides mRNA_120: 8488 - K10413 DYNC1H dynein heavy chain 1, cytosolic, at 281,260 to 295,239 8488 mRNA_121: 8489 - BLAST Pc20g03530 [Penicillium rubens Wisconsin 54-1255], at 295,395 to 296,134 8489 mRNA_122: 8490 - HMMPfam-Rare lipoprotein A (RlpA)-like double-psi beta-barrel-PF03330,SUPERFAMILY--SSF50685, at 296,451 to 297,684 8490

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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295,310 + +0.1
295,323 + -0.1
295,323 + +0.3
295,338 - +1.2
295,465 + +0.0
295,477 + 8489 mRNA_121 0.11 -1.0
295,626 + 8489 mRNA_121 0.31 +2.0
296,093 - -0.0
296,221 - -0.2
296,223 + +0.4
296,226 + -1.5
296,362 + -0.4
296,423 + +1.3
296,859 - 8490 mRNA_122 0.33 -0.1

Or see this region's nucleotide sequence