Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_133

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8500 and 8501 are separated by 418 nucleotides8501 and 8502 are separated by 323 nucleotides mRNA_132: 8500 - K16944 SEPT7, CDC3 septin 7, at 318,013 to 320,034 8500 mRNA_133: 8501 - Hypothetical Protein, at 320,453 to 321,837 8501 mRNA_134: 8502 - Hypothetical Protein, at 322,161 to 322,511 8502

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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320,354 + +0.7
320,479 - -0.6
320,571 - -0.2
320,641 - 8501 mRNA_133 0.14 +0.2
320,771 + 8501 mRNA_133 0.23 -0.2
320,805 + 8501 mRNA_133 0.25 -0.2
321,020 - 8501 mRNA_133 0.41 -0.2
321,501 - 8501 mRNA_133 0.76 -0.1
321,504 - 8501 mRNA_133 0.76 -1.9
321,517 + 8501 mRNA_133 0.77 +0.2
321,682 + 8501 mRNA_133 0.89 +0.3
321,941 - -0.3
321,962 + +0.9
322,119 + +0.1
322,256 - 8502 mRNA_134 0.27 -0.7
322,269 - 8502 mRNA_134 0.31 +0.1
322,407 - 8502 mRNA_134 0.70 +0.8
322,433 - 8502 mRNA_134 0.77 -0.5
322,543 - -0.5
322,554 + +0.2
322,629 - -2.6
322,668 + +0.8
322,683 - -0.3

Or see this region's nucleotide sequence