Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_140

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8507 and 8508 are separated by 133 nucleotides8508 and 8509 are separated by 507 nucleotides mRNA_139: 8507 - K14538 NUG1, GNL3 nuclear GTP-binding protein, at 333,941 to 336,511 8507 mRNA_140: 8508 - K14571 RIX7, NVL ribosome biogenesis ATPase, at 336,645 to 339,470 8508 mRNA_141: 8509 - Hypothetical Protein, at 339,978 to 342,089 8509

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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339,578 - +0.6
339,595 - -2.4
339,597 + -0.2
339,606 - +1.7
339,614 - +0.7
339,617 + +0.6
339,617 + -0.3
339,729 + -0.2
339,744 + -0.8
339,767 - -1.3
339,779 - +0.1
339,782 + +0.8
339,786 - +0.0
339,789 - -0.4
339,798 - +0.8
339,798 - -2.1
339,802 - +0.8
339,803 + +0.5
339,804 - +0.6
339,811 + +1.3
339,837 + +0.1
339,837 + +1.2
339,837 - -0.3
339,841 + +1.6
339,844 + +0.9
339,844 + +0.1
339,846 - -0.1
339,851 - +0.2
339,851 + -0.1
339,852 - -1.2
339,861 + +0.3
339,864 + +1.9
339,865 - +0.6
339,885 - -1.4
339,892 + +0.5
339,897 - +0.3
339,900 + -0.6
339,907 + -1.3
339,911 + +0.1
339,913 + +0.3
339,925 - +2.5
340,037 + +0.6
340,081 - -0.0
340,224 - 8509 mRNA_141 0.12 +2.0
340,239 + 8509 mRNA_141 0.12 -0.2

Or see this region's nucleotide sequence