Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_146

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8513 and 8514 are separated by 128 nucleotides8514 and 8515 are separated by 640 nucleotides mRNA_145: 8513 - KOG3299 Uncharacterized conserved protein, at 365,672 to 367,146 8513 mRNA_146: 8514 - HMMPfam-PB1 domain-PF00564,SUPERFAMILY--SSF54277, at 367,275 to 368,042 8514 mRNA_147: 8515 - K20120 BIN3 bridging integrator 3, at 368,683 to 371,935 8515

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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366,504 - 8513 mRNA_145 0.56 +1.1
366,772 - 8513 mRNA_145 0.75 -0.5
366,780 - 8513 mRNA_145 0.75 +1.3
368,252 - +0.5
368,256 + +0.5
368,266 - +0.1
368,390 - -0.9
368,394 - -0.4
368,411 - -1.5
368,412 - -0.9
368,413 + +0.6
368,455 + +0.7
368,583 - +2.1
368,699 - +1.6
368,710 - +1.4
368,725 - +1.8

Or see this region's nucleotide sequence