Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_194

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8562 and 8563 are separated by 177 nucleotides mRNA_194: 8562 - HMMPfam-Alpha/beta hydrolase family-PF12697,SUPERFAMILY--SSF53474, at 473,851 to 475,704 8562 mRNA_195: 8563 - K14570 REX1, REXO1, RNH70 RNA exonuclease 1, at 475,882 to 478,455 8563

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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472,879 + -0.1
472,892 - +0.2
472,894 + +2.2
473,064 - +0.3
473,084 - +0.3
473,085 - +0.1
473,093 + +0.1
473,102 + -0.8
473,102 - -0.7
473,111 - -0.6
473,115 + -1.3
473,154 - +1.6
473,169 + +1.4
473,169 - +0.9
473,176 + -0.4
473,188 + +0.8
473,188 - +1.1
473,193 + +0.3
473,199 + +1.3
473,210 - +0.0
473,211 + +2.6
473,224 + +0.5
473,228 + -0.4
473,230 - +1.6
473,231 - +0.5
473,239 - +1.2
473,243 + +0.3
473,244 + -1.3
473,247 + +0.2
473,250 + -0.1
473,269 + -0.0
473,280 + -0.5
473,283 - -1.0
473,297 - +0.1
473,302 + +0.3
473,323 - -0.2
473,351 - +0.2
473,358 - +1.7
473,365 - -1.0
473,368 + -0.3
473,393 - +0.8
473,394 + -0.2
473,403 + +1.4
473,406 - +2.1
473,414 + -0.9
473,425 + +0.3
473,466 + -0.5
473,474 - +0.0
473,479 + -0.2
473,482 - +0.6
473,489 - +0.1
473,503 - +0.1
473,509 + +0.9
473,510 - -0.1
473,523 - +0.2
473,545 - -0.3
473,578 - +1.1
473,610 - -1.4
473,611 + +1.2
473,658 + +0.3
473,671 + +1.1
473,695 - +0.8
473,718 - +0.5
473,770 - +0.8
473,790 - -0.4
473,796 - -1.0
473,972 + +2.0
473,981 + -0.8
474,194 + 8562 mRNA_194 0.19 -0.4
474,215 - 8562 mRNA_194 0.20 -0.3
474,254 + 8562 mRNA_194 0.22 -0.3
474,664 + 8562 mRNA_194 0.44 -0.6
474,674 + 8562 mRNA_194 0.44 +0.8
474,961 - 8562 mRNA_194 0.60 +1.9
475,410 - 8562 mRNA_194 0.84 -0.6
475,696 - +0.0
475,722 - +0.2
475,755 + +0.7

Or see this region's nucleotide sequence